A total number of 374 bacterial strains were isolated from fresh earthworm excrement by tube dilution assay. The result of plate test showed that 28 strains had antagonistic activity against Fusarium oxysporum f. sp. cucumerinum. According to the results of the suppression assay, strain D2 was selected as the best one. The inhibiting diameter was 28.28 mm and the inhibitory effect is stable. The mycelium shape, colony characteristic observation, a series of physiological and biochemistry experiments and determination of the sequence of 16 S rDNA of the D2 had been done. Identification of molecular biology of D2 obtained the target fragment sized 1 462 bp. Combined with its morphological and physiological and biochemical characteristics, the results showed that the strain was Burkholderia cenocepacia.